PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g101360.1
Common NameMTR_8g101360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 1097aa    MW: 121074 Da    PI: 6.6953
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g101360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23135236199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++        ++++  ++l+ +d++g++W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++
  Medtr8g101360.1 135 FCKQLTASDTSTHGGFSVPRRAAEKIfppldfsAQPPA--QELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFI--RD 224
                      99*****************************9544444..48************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  Medtr8g101360.1 225 EKQQLLLGIRRA 236
                      88889****997 PP

2Auxin_resp117.79.9e-39261344183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aaha +++s+F+v+YnPras+seFv++++k+ +a++ +++s+GmRf+m+feteds +rr++Gtv+gvsdld+vrW+nS+Wr+L+
  Medtr8g101360.1 261 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYsHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQ 344
                      799*******************************9889********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-42125264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-19134226No hitNo description
PROSITE profilePS5086312.449135237IPR003340B3 DNA binding domain
SMARTSM010191.2E-22135237IPR003340B3 DNA binding domain
PfamPF023621.7E-21135236IPR003340B3 DNA binding domain
PfamPF065077.0E-34261344IPR010525Auxin response factor
PROSITE profilePS5174527.8939841068IPR000270PB1 domain
PfamPF023091.1E-69851069IPR033389AUX/IAA domain
SuperFamilySSF542771.18E-69971062No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1097 aa     Download sequence    Send to blast
MTTTLEEGPS AAIAAVASEG EDKNDGGVNS ELWQACAGPL VNLPLPGTHV VYFPQGHSEQ  60
VAASLKKDGD VQVPNYSNLP SKLPCTLHSL TLHADSDTDE VYARMTLQPV SSFDMDAILR  120
SDISLKSNKP QPEFFCKQLT ASDTSTHGGF SVPRRAAEKI FPPLDFSAQP PAQELVAKDL  180
HGNVWKFRHI YRGQPKRHLL TTGWSLFISG KRLLAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHASANNSP FTVFYNPRAS PSEFVIPLAK YYRAVYSHQI  300
SPGMRFRMMF ETEDSGTRRY MGTVIGVSDL DSVRWKNSQW RNLQVGWDEA TAGERRSRVS  360
IWEIEPVTAP FFICPPPFFR PKRPRQPGMP DDESFDFSNL FKNTMPWLGD DMCMKDPQAF  420
PGMSLAQWMN IQQNPAMVSS LQPNHVPSMP ASVVQNLPGS DIAHQLGFST QQISQSNNVA  480
FNAPGMPQMP LSTSSGLGAV MQPEQHSRQN LAYQTLPQSQ VQTQLLNPQS IVQTNNILQS  540
QQPSIQNNQL HRSLSQNPLQ QFQQTIIGQN QPQNMIRPTM PDHINQQLHM SDNQVRLQLL  600
QKLQQQQQTL LSQQSALQQP AQIIQNHDQQ RQELDVTHNS RAITPRQVFE IPHTLQNSLL  660
EANSMNHQMT DHSSQNNVQF SHPAKQQKLQ HQQQQTQPGS LSKMSSHVGL PSATTANQLS  720
ASGCSIRTVA TGTVPSVNTD HAPSCSTSPS TNNCVGALPP VTTSQILMST IGDDVAQSAV  780
TILSQSSNAN VVKYAQPNYD VKPCLNISEN HNPVNFYPQT CLNGAAIQTD CLDTSSSTTS  840
VCLSQSDSRF HQTDRPVSYY PQSMFSRDNI QNVEVQADAR CNVAYGNSMN GQMRMPLNLD  900
STVTKGTARL GKDLSNDFSS GGLLGGYENN GDAQPELSSS MVSQTWGVPD MTFNSIDSTI  960
NDSGFLDSGP WAPRPPPHQF QRIRTYTKVY KRGAVGRSID ITRYSGYDEL KHDLARRFGI  1020
EGQLEDRQRV GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDGDFGN  1080
GGLPRQASSS SDGGIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612836551388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.101390.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400230.0AC140023.13 Medicago truncatula clone mth2-32h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630611.10.0auxin response factor 2
TrEMBLG7LIV90.0G7LIV9_MEDTR; Auxin response factor
STRINGGLYMA07G15640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]